2024-04-19 更新
Supervised Contrastive Vision Transformer for Breast Histopathological Image Classification
Authors:Mohammad Shiri, Monalika Padma Reddy, Jiangwen Sun
Invasive ductal carcinoma (IDC) is the most prevalent form of breast cancer. Breast tissue histopathological examination is critical in diagnosing and classifying breast cancer. Although existing methods have shown promising results, there is still room for improvement in the classification accuracy and generalization of IDC using histopathology images. We present a novel approach, Supervised Contrastive Vision Transformer (SupCon-ViT), for improving the classification of invasive ductal carcinoma in terms of accuracy and generalization by leveraging the inherent strengths and advantages of both transfer learning, i.e., pre-trained vision transformer, and supervised contrastive learning. Our results on a benchmark breast cancer dataset demonstrate that SupCon-Vit achieves state-of-the-art performance in IDC classification, with an F1-score of 0.8188, precision of 0.7692, and specificity of 0.8971, outperforming existing methods. In addition, the proposed model demonstrates resilience in scenarios with minimal labeled data, making it highly efficient in real-world clinical settings where labelled data is limited. Our findings suggest that supervised contrastive learning in conjunction with pre-trained vision transformers appears to be a viable strategy for an accurate classification of IDC, thus paving the way for a more efficient and reliable diagnosis of breast cancer through histopathological image analysis.
PDF 8 pages, 7 figures
点此查看论文截图
Pretraining Billion-scale Geospatial Foundational Models on Frontier
Authors:Aristeidis Tsaris, Philipe Ambrozio Dias, Abhishek Potnis, Junqi Yin, Feiyi Wang, Dalton Lunga
As AI workloads increase in scope, generalization capability becomes challenging for small task-specific models and their demand for large amounts of labeled training samples increases. On the contrary, Foundation Models (FMs) are trained with internet-scale unlabeled data via self-supervised learning and have been shown to adapt to various tasks with minimal fine-tuning. Although large FMs have demonstrated significant impact in natural language processing and computer vision, efforts toward FMs for geospatial applications have been restricted to smaller size models, as pretraining larger models requires very large computing resources equipped with state-of-the-art hardware accelerators. Current satellite constellations collect 100+TBs of data a day, resulting in images that are billions of pixels and multimodal in nature. Such geospatial data poses unique challenges opening up new opportunities to develop FMs. We investigate billion scale FMs and HPC training profiles for geospatial applications by pretraining on publicly available data. We studied from end-to-end the performance and impact in the solution by scaling the model size. Our larger 3B parameter size model achieves up to 30% improvement in top1 scene classification accuracy when comparing a 100M parameter model. Moreover, we detail performance experiments on the Frontier supercomputer, America’s first exascale system, where we study different model and data parallel approaches using PyTorch’s Fully Sharded Data Parallel library. Specifically, we study variants of the Vision Transformer architecture (ViT), conducting performance analysis for ViT models with size up to 15B parameters. By discussing throughput and performance bottlenecks under different parallelism configurations, we offer insights on how to leverage such leadership-class HPC resources when developing large models for geospatial imagery applications.
PDF
点此查看论文截图
Observation, Analysis, and Solution: Exploring Strong Lightweight Vision Transformers via Masked Image Modeling Pre-Training
Authors:Jin Gao, Shubo Lin, Shaoru Wang, Yutong Kou, Zeming Li, Liang Li, Congxuan Zhang, Xiaoqin Zhang, Yizheng Wang, Weiming Hu
Masked image modeling (MIM) pre-training for large-scale vision transformers (ViTs) in computer vision has enabled promising downstream performance on top of the learned self-supervised ViT features. In this paper, we question if the extremely simple ViTs’ fine-tuning performance with a small-scale architecture can also benefit from this pre-training paradigm, which is considerably less studied yet in contrast to the well-established lightweight architecture design methodology with sophisticated components introduced. By carefully adapting various typical MIM pre-training methods to this lightweight regime and comparing them with the contrastive learning (CL) pre-training on various downstream image classification and dense prediction tasks, we systematically observe different behaviors between MIM and CL with respect to the downstream fine-tuning data scales. Furthermore, we analyze the frozen features under linear probing evaluation and also the layer representation similarities and attention maps across the obtained models, which clearly show the inferior learning of MIM pre-training on higher layers, leading to unsatisfactory fine-tuning performance on data-insufficient downstream tasks. This finding is naturally a guide to choosing appropriate distillation strategies during pre-training to solve the above deterioration problem. Extensive experiments on various vision tasks demonstrate the effectiveness of our observation-analysis-solution flow. In particular, our pre-training with distillation on pure lightweight ViTs with vanilla/hierarchical design (5.7M/6.5M) can achieve 79.4%/78.9% top-1 accuracy on ImageNet-1K. It also enables SOTA performance on the ADE20K semantic segmentation task (42.8% mIoU) and LaSOT visual tracking task (66.1% AUC) in the lightweight regime. The latter even surpasses all the current SOTA lightweight CPU-realtime trackers.
PDF
点此查看论文截图
2024-04-19 更新
Conditional Prototype Rectification Prompt Learning
Authors:Haoxing Chen, Yaohui Li, Zizheng Huang, Yan Hong, Zhuoer Xu, Zhangxuan Gu, Jun Lan, Huijia Zhu, Weiqiang Wang
Pre-trained large-scale vision-language models (VLMs) have acquired profound understanding of general visual concepts. Recent advancements in efficient transfer learning (ETL) have shown remarkable success in fine-tuning VLMs within the scenario of limited data, introducing only a few parameters to harness task-specific insights from VLMs. Despite significant progress, current leading ETL methods tend to overfit the narrow distributions of base classes seen during training and encounter two primary challenges: (i) only utilizing uni-modal information to modeling task-specific knowledge; and (ii) using costly and time-consuming methods to supplement knowledge. To address these issues, we propose a Conditional Prototype Rectification Prompt Learning (CPR) method to correct the bias of base examples and augment limited data in an effective way. Specifically, we alleviate overfitting on base classes from two aspects. First, each input image acquires knowledge from both textual and visual prototypes, and then generates sample-conditional text tokens. Second, we extract utilizable knowledge from unlabeled data to further refine the prototypes. These two strategies mitigate biases stemming from base classes, yielding a more effective classifier. Extensive experiments on 11 benchmark datasets show that our CPR achieves state-of-the-art performance on both few-shot classification and base-to-new generalization tasks. Our code is avaliable at \url{https://github.com/chenhaoxing/CPR}.
PDF
点此查看论文截图
Zero-shot Building Age Classification from Facade Image Using GPT-4
Authors:Zichao Zeng, June Moh Goo, Xinglei Wang, Bin Chi, Meihui Wang, Jan Boehm
A building’s age of construction is crucial for supporting many geospatial applications. Much current research focuses on estimating building age from facade images using deep learning. However, building an accurate deep learning model requires a considerable amount of labelled training data, and the trained models often have geographical constraints. Recently, large pre-trained vision language models (VLMs) such as GPT-4 Vision, which demonstrate significant generalisation capabilities, have emerged as potential training-free tools for dealing with specific vision tasks, but their applicability and reliability for building information remain unexplored. In this study, a zero-shot building age classifier for facade images is developed using prompts that include logical instructions. Taking London as a test case, we introduce a new dataset, FI-London, comprising facade images and building age epochs. Although the training-free classifier achieved a modest accuracy of 39.69%, the mean absolute error of 0.85 decades indicates that the model can predict building age epochs successfully albeit with a small bias. The ensuing discussion reveals that the classifier struggles to predict the age of very old buildings and is challenged by fine-grained predictions within 2 decades. Overall, the classifier utilising GPT-4 Vision is capable of predicting the rough age epoch of a building from a single facade image without any training.
PDF
点此查看论文截图
How to build the best medical image segmentation algorithm using foundation models: a comprehensive empirical study with Segment Anything Model
Authors:Hanxue Gu, Haoyu Dong, Jichen Yang, Maciej A. Mazurowski
Automated segmentation is a fundamental medical image analysis task, which enjoys significant advances due to the advent of deep learning. While foundation models have been useful in natural language processing and some vision tasks for some time, the foundation model developed with image segmentation in mind - Segment Anything Model (SAM) - has been developed only recently and has shown similar promise. However, there are still no systematic analyses or ``best-practice’’ guidelines for optimal fine-tuning of SAM for medical image segmentation. This work summarizes existing fine-tuning strategies with various backbone architectures, model components, and fine-tuning algorithms across 18 combinations, and evaluates them on 17 datasets covering all common radiology modalities. Our study reveals that (1) fine-tuning SAM leads to slightly better performance than previous segmentation methods, (2) fine-tuning strategies that use parameter-efficient learning in both the encoder and decoder are superior to other strategies, (3) network architecture has a small impact on final performance, (4) further training SAM with self-supervised learning can improve final model performance. We also demonstrate the ineffectiveness of some methods popular in the literature and further expand our experiments into few-shot and prompt-based settings. Lastly, we released our code and MRI-specific fine-tuned weights, which consistently obtained superior performance over the original SAM, at https://github.com/mazurowski-lab/finetune-SAM.
PDF Code available at https://github.com/mazurowski-lab/finetune-SAM
点此查看论文截图
SegFormer3D: an Efficient Transformer for 3D Medical Image Segmentation
Authors:Shehan Perera, Pouyan Navard, Alper Yilmaz
The adoption of Vision Transformers (ViTs) based architectures represents a significant advancement in 3D Medical Image (MI) segmentation, surpassing traditional Convolutional Neural Network (CNN) models by enhancing global contextual understanding. While this paradigm shift has significantly enhanced 3D segmentation performance, state-of-the-art architectures require extremely large and complex architectures with large scale computing resources for training and deployment. Furthermore, in the context of limited datasets, often encountered in medical imaging, larger models can present hurdles in both model generalization and convergence. In response to these challenges and to demonstrate that lightweight models are a valuable area of research in 3D medical imaging, we present SegFormer3D, a hierarchical Transformer that calculates attention across multiscale volumetric features. Additionally, SegFormer3D avoids complex decoders and uses an all-MLP decoder to aggregate local and global attention features to produce highly accurate segmentation masks. The proposed memory efficient Transformer preserves the performance characteristics of a significantly larger model in a compact design. SegFormer3D democratizes deep learning for 3D medical image segmentation by offering a model with 33x less parameters and a 13x reduction in GFLOPS compared to the current state-of-the-art (SOTA). We benchmark SegFormer3D against the current SOTA models on three widely used datasets Synapse, BRaTs, and ACDC, achieving competitive results. Code: https://github.com/OSUPCVLab/SegFormer3D.git
PDF Accepted at CVPR Workshop 2024
点此查看论文截图
Optimization of Prompt Learning via Multi-Knowledge Representation for Vision-Language Models
Authors:Enming Zhang, Bingke Zhu, Yingying Chen, Qinghai Miao, Ming Tang, Jinqiao Wang
Vision-Language Models (VLMs), such as CLIP, play a foundational role in various cross-modal applications. To fully leverage VLMs’ potential in adapting to downstream tasks, context optimization methods like Prompt Tuning are essential. However, one key limitation is the lack of diversity in prompt templates, whether they are hand-crafted or learned through additional modules. This limitation restricts the capabilities of pretrained VLMs and can result in incorrect predictions in downstream tasks. To address this challenge, we propose Context Optimization with Multi-Knowledge Representation (CoKnow), a framework that enhances Prompt Learning for VLMs with rich contextual knowledge. To facilitate CoKnow during inference, we trained lightweight semantic knowledge mappers, which are capable of generating Multi-Knowledge Representation for an input image without requiring additional priors. Experimentally, We conducted extensive experiments on 11 publicly available datasets, demonstrating that CoKnow outperforms a series of previous methods. We will make all resources open-source: https://github.com/EMZucas/CoKnow.
PDF
点此查看论文截图
Supervised Contrastive Vision Transformer for Breast Histopathological Image Classification
Authors:Mohammad Shiri, Jiangwen Sun
Invasive ductal carcinoma (IDC) is the most prevalent form of breast cancer. Breast tissue histopathological examination is critical in diagnosing and classifying breast cancer. Although existing methods have shown promising results, there is still room for improvement in the classification accuracy and generalization of IDC using histopathology images. We present a novel approach, Supervised Contrastive Vision Transformer (SupCon-ViT), for improving the classification of invasive ductal carcinoma in terms of accuracy and generalization by leveraging the inherent strengths and advantages of both transfer learning, i.e., pre-trained vision transformer, and supervised contrastive learning. Our results on a benchmark breast cancer dataset demonstrate that SupCon-Vit achieves state-of-the-art performance in IDC classification, with an F1-score of 0.8188, precision of 0.7692, and specificity of 0.8971, outperforming existing methods. In addition, the proposed model demonstrates resilience in scenarios with minimal labeled data, making it highly efficient in real-world clinical settings where labelled data is limited. Our findings suggest that supervised contrastive learning in conjunction with pre-trained vision transformers appears to be a viable strategy for an accurate classification of IDC, thus paving the way for a more efficient and reliable diagnosis of breast cancer through histopathological image analysis.
PDF 8 pages, 7 figures
点此查看论文截图